Molecular dynamics study on the role of solvation water in the adsorption of hyperactive AFP to the ice surface

文献情報

出版日 2018-09-27
DOI 10.1039/C8CP05027A
インパクトファクター 3.676
著者


原文を見る

要旨

Using computer simulations, the early stages of the adsorption of the CfAFP molecule to the ice surface were analyzed. We found that the ice and the protein interact at least as early as when the protein is about 1 nm away from the ice surface. These interactions are mediated by interfacial solvation water and are possible thanks to the structural ordering of the solvent. This ordering leads to positional preference of the protein relative to the ice crystal before the final attachment to the ice surface takes place, accompanied by the solidification of the interfacial water. It is possible because the solvation water of the ice-binding plane of CfAFP is susceptible to the overlapping with the solvation water of ice and is mostly changeable into ice itself. These remote interactions significantly increase efficacy of the adsorption process by facilitating the geometric adjustment of the active region of the CfAFP molecule to the ice surface. Because of the ordered nature of the water molecules at the ice-binding plane, the energy of their interactions with the ice-binding surface of the protein does not change upon the ongoing solidification of solvation water. However, the structure of the solvation water is not strictly ice-like and the growth of ice in the interfacial water is not initiated at the side of the protein. On the contrary, we find that solvation water of CfAFP solidifies slower than solvation water of ice – the solidification of interfacial water starts at the surface of ice. Moreover, in the presence of the CfAFP molecule, also solvation water of ice solidifies slower compared to the situation when the protein is not present next to the ice surface. Additionally, the presence of the protein molecule shifts the ratio of cubic to hexagonal ice that spontaneously forms at the ice surface, by introducing another layer of ordered water molecules – opposite to the ice lattice, at the other side of the crystallizing layer of water.

関連文献

Role of electron and hole doping in the NdNi1−xVxO3 nanostructure

Raktima Basu, Reshma Kumawat, Mrinmay Sahu, Abu Bakkar Miah, Partha Mitra, Goutam Dev Mukherjee

2023-11-03 Paper

DOI: 10.1039/D3CP01409F

Ag nanoparticle modified porous Si microspheres as high-performance anodes for Li-ion batteries

Wenhao Pan, Changjiang Yang, Lei Zhou, Xiaolan Cai, Yankun Wang, Junhao Tan, Jun Chang

2023-11-04 Paper

DOI: 10.1039/D3CP03677D

Impacts of QM region sizes and conformation numbers on modelling enzyme reactions: a case study of polyethylene terephthalate hydrolase

Mingna Zheng, Yanwei Li, Qingzhu Zhang, Wenxing Wang

2023-10-24 Paper

DOI: 10.1039/D3CP04519F

Cryogenic fluorescence spectroscopy of oxazine ions isolated in vacuo

Christina Kjær, Emil Vogt, Jeppe Langeland, Nanna Falk Christensen, Thomas Toft Lindkvist, Henrik G. Kjaergaard, Steen Brøndsted Nielsen

2023-11-22 Paper

DOI: 10.1039/D3CP04615J

Relativistic coupled-cluster calculations of RaOH pertinent to spectroscopic detection and laser cooling

Chaoqun Zhang, Phelan Yu, Chandler J. Conn, Nicholas R. Hutzler, Lan Cheng

2023-11-24 Paper

DOI: 10.1039/D3CP04040B

Prediction of superconductivity in metallic boron–carbon compounds from 0 to 100 GPa by high-throughput screening

Yang Sun, Renhai Wang, Yimei Fang, Shunqing Wu, Qiubao Lin, Kai-Ming Ho

2023-11-14 Paper

DOI: 10.1039/D3CP03844K

Osmolyte induced protein stabilization: modulation of associated water dynamics might be a key factor

Kuldeep Singh Negi, Nilimesh Das, Tanmoy Khan, Pratik Sen

2023-11-27 Paper

DOI: 10.1039/D3CP03357K

Diary of conferences and courses

News

DOI: 10.1039/B203432H

Target–ligand binding affinity from single point enthalpy calculation and elemental composition

Viktor Szél, Balázs Zoltán Zsidó, Norbert Jeszenői, Csaba Hetényi

2023-11-03 Paper

DOI: 10.1039/D3CP04483A

こちらもおすすめ

化合物よくある質問

6- bromo-1-cyclopropyl-1H-benzimidazoleの市場動向や研究トレンドはどうですか?

6- bromo-1-cyclopropyl-1H-benzimidazoleは、抗炎症、抗ウイルス作用を持つことが報告されており、新薬開発の研究対象として注目...

1416713-53-56-Bromo-1-cyclopropy...
化合物よくある質問

環氧プロpanol-d5を取り扱う際の実験室安全事項は何ですか?

取り扱う際には、防護眼鏡と手袋を使用し、ドラフトチャンバー内で操作することを推奨します。漏洩時には適切な手順で処理し、安全データシートを常に参照してください。

1246819-20-4Glycidol-d5
化合物よくある質問

2,2’-ジメチル-3,3’-ビピリジンはどのように合成されますか?

2,2’-ジメチル-3,3’-ビピリジンは、ピリジンと2-メチルアクリルアミドを有機合成反応で合成します。この反応では、ピリジンと2-メチルアクリルアミドを含有...

86156-55-02,2’-Dimethyl-3,3’-b...
化合物よくある質問

6-甲基ピリジン-2-ボリック酸の主な用途は何ですか?

6-甲基ピリジン-2-ボリック酸は、合成化学、医薬品合成、以及研究用途などに広く使用され、特に組換えDNA技術や分子生物学の研究において重要な役割を果たします。

372963-50-3(6-Methyl-2-pyridiny...
化合物よくある質問

(R)-3-(1-甲基-2-氧環己基)プロpano酸メチルは安全ですか?

(R)-3-(1-甲基-2-氧環己基)プロpano酸メチルは一定の安全性がありますが、直接的な皮膚接触や吸入は避けるべきです。使用する際は適切な個々の安全データ...

94089-47-1methyl 3-[(1R)-1-met...
化合物よくある質問

ketorolacはどのように保存すればよいですか?

ketorolacは、密封して遮光容器に保管し、直射日光や高温を避けて保存してください。温度は常温で保存し、湿度をなるべく低く保つことが推奨されます。

74103-06-3rac Ketorolac
化合物よくある質問

L-2,3-二氨基丙酸二盐酸盐を取り扱う際の実験室安全事項は何ですか?

L-2,3-二氨基丙酸二盐酸盐は腐食性が強く、皮膚や粘膜に刺激を与える可能性があります。取り扱う際は、防塵マスク、ゴーグル、手袋を使用し、適切な排気設備を使用し...

19777-68-5(S)-2,3-Diaminopropa...
化合物よくある質問

2-(4-溴ピリジン-2-基)乙腈の物理化学的性質は何ですか?

2-(4-溴ピリジン-2-基)乙腈のCAS番号は312325-73-8です。主に結晶形態で存在し、分子量は159.01 g/molです。この化合物は水に溶けやす...

312325-73-8(4-Bromo-2-pyridinyl...
化合物よくある質問

3-フローロ-[1,1-ベンジレン]-3,4-ジカルボン酸を取り扱う際の実験室安全事項は何ですか?

この化合物は毒性は低いですが、直接的な接触や吸入に注意が必要です。PPE(個人防護具)を着用し、ドラフトチャンバーを使用して操作することを推奨します。また、漏洩...

1261915-32-53'-Fluoro-[1,1'-biph...
化合物よくある質問

3-(1-氧代-1,3-二氢-2H-2-异吲哚)丙酸の主な用途は何ですか?

3-(1-氧代-1,3-二氢-2H-2-异吲哚)丙酸は、薬理学研究や医薬品製造において広く用いられる化合物です。また、工業的な用途でも一部の化学反応の触媒や助剤...

83747-30-23-(1-Oxo-1,3-dihydro...

掲載誌

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
自己引用率: 10.3%
年間論文数: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

おすすめ化合物

おすすめサプライヤー

免責事項
このページに表示される学術雑誌情報は、参考および研究目的のみを目的としています。当社は雑誌出版社とは提携しておらず、投稿の取り扱いも行っておりません。出版に関するお問い合わせは、各雑誌出版社に直接ご連絡ください。
表示されている情報に誤りがある場合は、support@chemtradehub.com までご連絡ください。迅速に確認し、対応いたします。